Base Pair Deformations
rotations
|
translations
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structure tool
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Williams Page
Helical Parameters
A-
conformation
B-
conformation
Z-
conformation
B/Z
junction
images
images
images
images
coordinates
coordinates
coordinates
coordinates
Helical Sense
Rh
Rh
Lh
Helical Diameter
26 Å
20 Å
18 Å
Twist/Base Pair
31°
36°
-30°
Rise/Base Pair
2.8 Å
3.3 Å
3.7 Å
Base Pairs/Turn
11
10
-12
Rise/Turn (pitch)
28 Å
34 Å
45 Å
Roll (
r
)
8.0°
0.6°
0°
x-disp
-4.17 Å
0.05 Å
0 Å
inclination
14.7 °
2.1 °
°
Groove Shape
Major Groove
Narrow, Deep
Wide, Deep
Convex Surface
Minor Groove
Wide Shallow
Narrow, Deep
Narrow, Deep
Sugar Pucker
C3'-Endo
C2'-Endo
C3'-Endo (Purines), C2'-Endo (Pyrimidines)
Glycosidic bond
(
c
)
Anti
Anti
Syn (Purines), Anti (Pyrimidines)